Your procedure sounds good, the only thing I don't like is one side being dictated by screwing the stop in.
Now that it's together, bring the piston down, tighten the stop in a little bit more, and recreate your test by turning the engine one way until it stops, then the other.
I assume you may have already did that, but the way it was written concerns be that one side of it may be off.
The next thing would be to pull the balancer and see if the numbers come together with the new balancer., if you are still off it's likely you.
One last comment, I see no benefit for that ATI for your application, if the second balancer lined up, I'd be done