Absolutely agree with Brent, but you polished the crank and are now .0005-.0007 tighter? You'd expect the opposite if all the parts are the same.
Are you using the same procedure that you used with the first build? Have you rechecked your mic? Same block?
I'd make sure the locating tabs are clean, check your mic against the standard, and if you have the old bearings around, remeasure.
Brent's probably laughing right now because in my garage, unheated at night, this winter I was getting all kinds of odd numbers on 390 4V during the course of the day and it was driving me bonkers, but when measuring down to that variance all kinds of stuff can change your numbers
That being said, if the numbers are repeatable, then they are what they are