I apologize but I'm not following you? 
...what's your procedure to account differences in every crank at the pin? I have no procedure for that. In this case, yes more oil, but also cup plugs and clips?
"Differences"? Is this in weight value? This is what the balancing procedure is intended to address. Now the metal will be a constant, this including the plugs & clips (as applicable) and as should be mounted during the balancing process. Now in the case of the FE cross-drilled steel crankshaft the area under the plugs can vary a bit (depending on the machining which includes the internal boring profile and plugging positioning) and this can cause a difference in oil volume and hence weight being retained, but this can be established, but in really isn't such a great variable. 
So there is more oil, but it's offset by other things too, and then I'd question if all journals are a common thickness . . . . . . we'd need to be much more accurate on journal ID, component parts, and oil.
"Offset by other things" Do you mean directly, or as indirectly in the sense that considering all of the other compromises this inaccuracy will just be lost in the mix? 
Scott.
Good points, simplified, one "side" is the real weight of the journal, plus the calculated bob. The other "side" is the counterweight, so it really doesn't matter that the crank has the plugs and clips because their forces are accounted for when you spin it, unlike the oil that isn't there when you spin it.
Despite spinning a bunch, I overthought those effects. They are accounted for, the oil is not
I tend to use 5 grams oil per rod, it would be interesting to see how much that differs with the plugged journal, 10 grams is about 12cc
As far as other things, part of this discussion leads me to over/under balance, in a 2200 gram bobweight in a typical 3.78 build, the oil allowance is very small in percentage overall, and stacked variances in measuring, balancer accuracy, bobweight placement and things like that we all try to minimize, could still end up within a decimal point of over or under balance even with the "wrong" oil allowance. It's not huge
Long way of saying the acceptable target widow is pretty wide in most cases. It's funny, a million tricks on how to lead the drill, offset holes etc, and I always try to get the numbers very low, but in the end, the window really is just that