If you want to keep your GT manifolds, the easiest solution is to just re-do your existing heads. There is proof beyond any doubt that your manifolds fit those heads. Here's the detail: "GT" heads or more correctly; unibody heads, are drilled with a 14-bolt exhaust flange. The top two bolt holes on the ends of the heads are a bit lower than the traditional FE vertical bolt location. So, there are three bolt configurations for FE heads: Your 14-bolt unibody pattern, the 16-bolt Cobra Jet pattern, and the traditional vertical 8-bolt pattern. Your manifold will fit only the unibody heads without modification. Any other head either requires modification or can't be used at all since there is no flange material for the horizontal bolt holes.
Could you use your GT manifolds on something like an Edelbrock alloy head? Only if you drill those two end bolt holes into the head. There could be port mismatch issues, but I can't say that for certain.
What would it cost to freshen up your heads? It depends on what work the heads need and what work you're willing to pay for. If the seats and valves, and springs check out and you need only guide inserts, maybe a couple hundred bucks. More work means more items on the bill. You would need to take the heads to a machinist for a thorough examination.