I don't think the choke issue, if compared to a manual choke will be too bad, just need to let it warm up before you go.
As far as the horn, if the horn is too close to the lid it will help airflow, but having air turn a corner right over the booster isn't the greatest for metering either.
The oval air cleaners with a stock height filter are pretty bad, its a 90 degree turn right at the carb. Any way you can give that air time to turn, the better. Another option may be to cut the choke horn, but not all the way to the base, or if there is a way to make room, run a taller filter element
Also make sure there is room for the bowl vents, some Holleys have some pretty tall vent tubes an they need some airflow too, although not a lot. It's also best to keep them up above the entrance to stop pullover/slosh, especially during launch and braking