For Fairlanes, crossmembers are based upon the engine, not the transmission type. Your FE crossmember is the same for automatic or manual. Smallblock and six crossmembers are different.
As above, C6 and big in and out toploaders use the same 31-spline yoke. Small in and out and C4 are the same 28-spline yoke.
As for the transmissions, the long tail toploader is the same length as the C6 at 27". The short tail is the same length as the C4 at 24". This is important to know when it comes to the driveshaft. Your case may be different, but if you replace a C6 with a long tail toploader, you don't need to replace the driveshaft except the yoke if necessary.