Custom pushrod lengths don't affect rocker arm geometry.
Rocker arm geometry is how the rocker arm interfaces with the valve tips. Changing pushrod length on an FE doesn't affect rocker arm geometry, but for whatever stand height (which does affect geometry) you settle on, then the pushrods have to obviously work between the rockers and the lifters.
Simply put, rocker arm geometry is based on what kind of pattern you get on the valve tips, plus how much lift you gain/lose because of the geometry you end up with. If the rocker arm tip rides the intake side of the valve hard, or the exhaust side of the valve hard, then you can get increased valve guide wear and reduced net lift. Also, if you have a wide pattern, you're losing lift because the rocker arm tip is spending too much time moving across the valve tip instead of translating motion in making the valves go down.
All in all, you want to try to have as narrow of a pattern as you can, somewhere near the center of the valve tip.